tailieunhanh - CUDASW++ 3.0: Accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

The maximal sensitivity for local alignments makes the Smith-Waterman algorithm a popular choice for protein sequence database search based on pairwise alignment. However, the algorithm is compute-intensive due to a quadratic time complexity. Corresponding runtimes are further compounded by the rapid growth of sequence databases. |