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Read mapping on de Bruijn graphs

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Next Generation Sequencing (NGS) has dramatically enhanced our ability to sequence genomes, but not to assemble them. In practice, many published genome sequences remain in the state of a large set of contigs. |

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Assessing the impact of exact reads on reducing the error rate of read mapping

Fast and efficient short read mapping based on a succinct hash index

Read mapping on de Bruijn graphs

Adaptable probabilistic mapping of short reads using position specific scoring matrices

An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

Improving read mapping using additional prefix grams

Re-examination of two diatom reference genomes using long-read sequencing

Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods

Novel read density distribution score shows possible aligner artefacts, when mapping a single chromosome

Zea mays RNA-seq estimated transcript abundances are strongly affected by read mapping bias