tailieunhanh - A decade of tomato transcriptomics: Status and perspectives

Tomato is widely consumed vegetable in the world. It is used as raw and processed form. Tomato flowers are self as well as controlled pollinated. The crop has more than thirteen species including cultivated and wild types with huge diversity and is susceptible to diverse stress conditions. Recent advances in the biotic and abiotic stress in tomato transcriptomics have been reviewed here. Transcriptome is a particular set of RNA expressed during a stress, developmental stages or a condition in a group of cells. Transcriptomics is a promising technology for understanding molecular interactions during disease, interpretation of functional elements and molecular constituents of cell. Transcriptomics allows indexing all transcripted species such as mRNA & small RNA; to determine gene structure: start site, 5‟and 3‟ends, transcriptional modification, splicing patterns; and to quantify differential gene expression in stress condition. | 2020 9 3 2026-2056 EXCELLENT PUBLISHERS International Journal of Current Microbiology and Applied Sciences ISSN 2319-7706 Volume 9 Number 3 2020 Journal homepage http Review Article https A Decade of Tomato Transcriptomics Status and Perspectives Kinjal Kulshrestha and Akarsh Parihar Centre of Excellence in Biotechnology Department of Agricultural Biotechnology Anand Agricultural University Anand-388110 Gujarat India Corresponding author ABSTRACT Keywords Solanum lycopersicum transcriptomics tomato genome RNA Seq. bioinformatics Article Info Accepted 15 February 2020 Available Online 10 March 2020 Tomato is widely consumed vegetable in the world. It is used as raw and processed form. Tomato flowers are self as well as controlled pollinated. The crop has more than thirteen species including cultivated and wild types with huge diversity and is susceptible to diverse stress conditions. Recent advances in the biotic and abiotic stress in tomato transcriptomics have been reviewed here. Transcriptome is a particular set of RNA expressed during a stress developmental stages or a condition in a group of cells. Transcriptomics is a promising technology for understanding molecular interactions during disease interpretation of functional elements and molecular constituents of cell. Transcriptomics allows indexing all transcripted species such as mRNA small RNA to determine gene structure start site 5 and 3 ends transcriptional modification splicing patterns and to quantify differential gene expression in stress condition. There are many techniques of transcriptomics such as RNA sequencing Microarray EST and SAGE. Transcriptomics by RNASeq is frequently used system as being cost effective. Sample preparation is a critical step for sequencing procedure. High quality RNA is essential. As transcriptomics yield huge amount of datasets bioinformatics tools are required for proper data analysis. Gene .

• Nông nghiệp
• Solanum lycopersicum
• Tomato genome
• RNA Seq
• Decade of tomato transcriptomics
• Tomato transcriptomics
• Population distribution
• Gene action
• Solanum lycopersicum L
• Solanum habrochaites L
• Tomato (Solanum lycopersicum L )
• Bacterial wilt
• Tomato leaf curl virus diseases
• Single cross hybrids
• Tomato (Solanum lycopersicum)
• Path coefficient
• Tomato (Solanum lycopersicum L
• Path coefficient analysis
• Component traits
• Resistant F4 progenies
• Standard check
• General combining ability
• Specific combining ability
• Protected cultivation
• Persistence of imidacloprid
• Lambda cyhalothrin on tomato
• Genetic divergence
• Fruit yield in tomato
• Fruit per cluster
• Yield and yield components
• Heterosis studies for yield
• Components in tomato
• Genetic diversity
• D 2 analysis
• Clustering pattern
• Thermo tolerant genotypes of tomato
• Quality traits
• Genotype x environment interaction
• Quality traits in tomato
• Solanum melongena L
• Long distance signal transduction
• Metabolite movement
• Physiological stages
• Plant grafting
• BMC Plant Biology
• RNA sequencing
• Alternative splicing
• Solanum habrochaites
• Proteinase inhibitor
• Wound inducible
• In vitro
• Phylogenetic tree
• Chuyển nạp gen HIV 1 p24
• Nạp gen HIV 1 p24 vào lạp thể
• Lạp thể cây cà chua
• Cây cà chua Solanum Lycopersicum L
• Phương pháp bắn gen
• Chuyển gien vào lục lạp
• Combining ability
• Variance components for yield
• Yield and quality traits
• Double cross hybrids
• Correlation and path analysis
• Quality and yield traits
• Yield contributing traits
• Involving improved germplasm lines
• Quality traits and yield
• Heterotic effects
• Inbreeding depression
• Mycelial growth
• Fungal pathogen
• pH levels
• In vitro condition
• Early blight of tomato
• Standardization of pH
• pH of the solution
• Soil less agriculture system
• Solution for tomato
• Cluster analysis
• Mahalonobis D2
• Genetic diversity among tomato
• Yield and yield attributing characters
• Heterosis studies
• Yield attributing characters of tomato
• Front line demonstration
• BC Ratio
• Extension gap
• Technology index
• Tomato (Solanum lycopersicum Mill)
• Ảnh hưởng của tiền xử lý nhiệt
• Tiền xử lý nhiệt
• Sự nẩy mầm cây cà chua
• Tăng trưởng của cây cà chua
• Điều kiện stress hạn
• Salt stress
• Seed treatments
• Ascorbic acid
• Germination rate
• Water stress
• Relative water content
• Proline content
• Stomatal frequency
• Genetic parameters
• Bombus haemorrhoidalis
• Bumble bee
• Tomato (Solanum lycopersicum Mill
• Protected conditions
• Bumble bee pollination
• Quality and yield of tomato